Research-ready inputs
Count matrices, quantification outputs, metadata, contrasts, and authorized public/anonymized datasets.
Independent bioinformatics analyst
RNA-seq and splicing analysis support for research teams.
I turn transcriptomics data into clear tables, publication-ready figures, reproducible scripts, and short reports. The work is research support, not clinical diagnosis or patient-level interpretation.
- RNA-seq differential expression workflows with count filtering, QC summaries, DEG tables, PCA, heatmaps, and volcano plots
- Alternative splicing support focused on rMATS outputs, candidate event review, and sashimi-ready handoff
- GSEA/pathway interpretation that turns gene lists into readable research notes
- Exploratory metabolic-modeling demos with Human-GEM (iMAT, GIMME)
RNA-seq workflow output
GitHub portfolio
Example output from public dataset.
PCA
Heatmap
Volcano
DEG table
QC summary
Result tables
Methods note
Established open-source tools
R, Python, DESeq2-style analysis, rMATS splicing review, GSEA/pathway summaries.
Publication-ready handoff
Figures, result tables, scripts, and concise methods notes organized for researcher review.
For researchers who need analysis outputs they can inspect, explain, and reuse.
The work stays focused: transcriptomics, alternative splicing, scientific visualization, pathway summaries, and small automation tools for wet-lab data handling.
What I offer
RNA-seq Differential Expression
DESeq2-style workflows with QC summaries, filtered count matrices, normalized counts, DEG tables, PCA, heatmaps, volcano plots, and concise reports.
Alternative Splicing Review
rMATS workflow notes, exon skipping and junction-level summaries, event filtering, and sashimi plot preparation for selected genes.
Publication-Ready Visuals
PCA, sample-distance heatmaps, DEG heatmaps, volcano plots, pathway plots, expression summaries, and clean figure exports for manuscript workflows.
Functional Interpretation
GSEA and enrichment-oriented summaries that translate ranked gene lists or DEG sets into readable pathway-level research notes.
Also available: small Python/Bash helpers for repetitive lab data tasks.
Selected work
R / DESeq2
Open repository
RNA-seq Workflow
End-to-end DEG workflow with count data, metadata, QC, DESeq2 analysis, PCA, heatmaps, volcano plot, result tables, and a short interpretation report.
Alternative Splicing Notes
A public rMATS skipped-exon analysis example with event filtering and candidate review notes.
Open repositoryiMAT Tool
Interactive terminal tool for per-sample Human-GEM iMAT, Fisher and reporter-like analysis, and optional gene zeroing, with a synthetic demo.
Open projectReady to discuss a dataset?
Send organism, data type, sample groups, contrast, and expected outputs, and say whether you need figures, tables, scripts, or a short report. Initial projects can be coordinated through trusted freelance platforms or a structured project brief.
I usually reply within 24-48 hours.